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LOC110762709 mediator of RNA polymerase II transcription subunit 23 [ Prunus avium (sweet cherry) ]

Gene ID: 110762709, updated on 21-Dec-2023

Summary

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Gene symbol
LOC110762709
Gene description
mediator of RNA polymerase II transcription subunit 23
Gene type
protein coding
RefSeq status
MODEL
Organism
Prunus avium
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus
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Genomic context

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See LOC110762709 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
100 current PAV_r1.0 (GCF_002207925.1) Unplaced Scaffold NW_018921964.1 (57873..68908)

NW_018921964.1Genomic Context describing neighboring genes Neighboring gene F-box protein SKIP28 Neighboring gene glucan endo-1,3-beta-glucosidase 3 Neighboring gene protein TIFY 6B-like Neighboring gene plant UBX domain-containing protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018921964 Unplaced Scaffold Reference PAV_r1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mediator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mediator of RNA polymerase II transcription subunit 23

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prunus avium Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAV_r1.0

Genomic

  1. NW_018921964.1 Reference PAV_r1.0

    Range
    57873..68908
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021965379.1 → XP_021821071.1  mediator of RNA polymerase II transcription subunit 23 isoform X2

    UniProtKB/TrEMBL
    A0A6P5T2V9
    Conserved Domains (1) summary
    pfam11573
    Location:639 → 1295
    Med23; Mediator complex subunit 23

  2. XM_021965378.1 → XP_021821070.1  mediator of RNA polymerase II transcription subunit 23 isoform X1

    UniProtKB/TrEMBL
    A0A6P5SW62
    Conserved Domains (1) summary
    pfam11573
    Location:672 → 1328
    Med23; Mediator complex subunit 23
Nucleotide Protein
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