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LOC110727963 cellulose synthase-like protein D5 [ Chenopodium quinoa (quinoa) ]

Gene ID: 110727963, updated on 21-Dec-2023

Summary

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Gene symbol
LOC110727963
Gene description
cellulose synthase-like protein D5
Gene type
protein coding
RefSeq status
MODEL
Organism
Chenopodium quinoa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Genomic context

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See LOC110727963 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current ASM168347v1 (GCF_001683475.1) Unplaced Scaffold NW_018742914.1 (4883156..4888692)

NW_018742914.1Genomic Context describing neighboring genes Neighboring gene zinc finger SWIM domain-containing protein 7-like Neighboring gene eukaryotic translation initiation factor 6-2 Neighboring gene uncharacterized LOC110727964 Neighboring gene probable galacturonosyltransferase-like 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018742914 Unplaced Scaffold Reference ASM168347v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase-like protein D5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chenopodium quinoa Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM168347v1 Primary Assembly

Genomic

  1. NW_018742914.1 Reference ASM168347v1 Primary Assembly

    Range
    4883156..4888692
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021907554.1 → XP_021763246.1  cellulose synthase-like protein D5

    UniProtKB/TrEMBL
    A0A803M9C4
    Conserved Domains (1) summary
    PLN02248
    Location:73 → 1195
    PLN02248; cellulose synthase-like protein
Nucleotide Protein
Heading Accession and Version

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