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LOC110670803 probable galacturonosyltransferase 9 [ Hevea brasiliensis (rubber tree) ]

Gene ID: 110670803, updated on 2-Nov-2023

Summary

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Gene symbol
LOC110670803
Gene description
probable galacturonosyltransferase 9
Locus tag
P3X46_016288
Gene type
protein coding
RefSeq status
MODEL
Organism
Hevea brasiliensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Genomic context

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See LOC110670803 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM3005281v1 (GCF_030052815.1) 9 NC_079501.1 (21314824..21317310, complement)
100 previous assembly ASM165405v1 (GCF_001654055.1) Unplaced Scaffold NW_018745713.1 (719311..721821)

Chromosome 9 - NC_079501.1Genomic Context describing neighboring genes Neighboring gene transfer RNA leucine (anticodon CAG) Neighboring gene 6-phosphogluconate dehydrogenase, decarboxylating 2-like Neighboring gene basic leucine zipper 43-like Neighboring gene E3 ubiquitin-protein ligase CIP8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene expression analysis and SNP/InDel discovery to investigate yield heterosis of two rubber tree F1 hybrids. Li D, et al. Sci Rep, 2016 Apr 25. PMID 27108962, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030052815.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3005281v1 Primary Assembly

Genomic

  1. NC_079501.1 Reference ASM3005281v1 Primary Assembly

    Range
    21314824..21317310 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021833037.2 → XP_021688729.1  probable galacturonosyltransferase 9

    UniProtKB/TrEMBL
    A0A6A6MIU4
    Conserved Domains (1) summary
    PLN02523
    Location:17 → 561
    PLN02523; galacturonosyltransferase
Nucleotide Protein
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