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LOC110663992 hydroxyproline O-galactosyltransferase GALT6 [ Hevea brasiliensis (rubber tree) ]

Gene ID: 110663992, updated on 2-Nov-2023

Summary

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Gene symbol
LOC110663992
Gene description
hydroxyproline O-galactosyltransferase GALT6
Locus tag
P3X46_031048
Gene type
protein coding
RefSeq status
MODEL
Organism
Hevea brasiliensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Genomic context

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See LOC110663992 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM3005281v1 (GCF_030052815.1) 17 NC_079509.1 (9796939..9801642)
100 previous assembly ASM165405v1 (GCF_001654055.1) Unplaced Scaffold NW_018745966.1 (170652..175472)

Chromosome 17 - NC_079509.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110660521 Neighboring gene transcription factor MYB35-like Neighboring gene transcription initiation factor IIB-2-like Neighboring gene AAA-ATPase ASD, mitochondrial-like Neighboring gene DDT domain-containing protein DDR4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene expression analysis and SNP/InDel discovery to investigate yield heterosis of two rubber tree F1 hybrids. Li D, et al. Sci Rep, 2016 Apr 25. PMID 27108962, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030052815.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3005281v1 Primary Assembly

Genomic

  1. NC_079509.1 Reference ASM3005281v1 Primary Assembly

    Range
    9796939..9801642
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021823502.2 → XP_021679194.2  hydroxyproline O-galactosyltransferase GALT6

Nucleotide Protein
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Molecular Biology Databases