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LOC110661479 probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [ Hevea brasiliensis (rubber tree) ]

Gene ID: 110661479, updated on 2-Nov-2023

Summary

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Gene symbol
LOC110661479
Gene description
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC
Locus tag
P3X46_008285
Gene type
protein coding
RefSeq status
MODEL
Organism
Hevea brasiliensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Genomic context

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See LOC110661479 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM3005281v1 (GCF_030052815.1) 5 NC_079497.1 (4923208..4933013, complement)
100 previous assembly ASM165405v1 (GCF_001654055.1) Unplaced Scaffold NW_018745897.1 (1226800..1236588)

Chromosome 5 - NC_079497.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like Neighboring gene germin-like protein subfamily 1 member 13 Neighboring gene pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like Neighboring gene GDSL esterase/lipase At5g33370-like Neighboring gene GDSL esterase/lipase At5g18430-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Draft genome sequence of the rubber tree Hevea brasiliensis. Rahman AY, et al. BMC Genomics, 2013 Feb 2. PMID 23375136, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030052815.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3005281v1 Primary Assembly

Genomic

  1. NC_079497.1 Reference ASM3005281v1 Primary Assembly

    Range
    4923208..4933013 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_058146645.1 → XP_058002628.1  probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases