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LOC110659579 cellulose synthase A catalytic subunit 3 [UDP-forming] [ Hevea brasiliensis (rubber tree) ]

Gene ID: 110659579, updated on 2-Nov-2023

Summary

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Gene symbol
LOC110659579
Gene description
cellulose synthase A catalytic subunit 3 [UDP-forming]
Locus tag
P3X46_009264
Gene type
protein coding
RefSeq status
MODEL
Organism
Hevea brasiliensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Genomic context

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See LOC110659579 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM3005281v1 (GCF_030052815.1) 5 NC_079497.1 (104464499..104471599, complement)
100 previous assembly ASM165405v1 (GCF_001654055.1) Unplaced Scaffold NW_018745857.1 (361591..368820)

Chromosome 5 - NC_079497.1Genomic Context describing neighboring genes Neighboring gene zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like Neighboring gene uncharacterized LOC110659543 Neighboring gene polygalacturonase-like Neighboring gene probable galactinol--sucrose galactosyltransferase 2 Neighboring gene calcium-dependent protein kinase 32

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 3 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030052815.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3005281v1 Primary Assembly

Genomic

  1. NC_079497.1 Reference ASM3005281v1 Primary Assembly

    Range
    104464499..104471599 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021817540.2 → XP_021673232.2  cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X3

  2. XM_021817537.2 → XP_021673229.2  cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X1

  3. XM_021817539.2 → XP_021673231.2  cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X2

  4. XM_021817543.2 → XP_021673235.2  cellulose synthase A catalytic subunit 3 [UDP-forming] isoform X4

Nucleotide Protein
Heading Accession and Version

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