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LOC110646702 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 [ Hevea brasiliensis (rubber tree) ]

Gene ID: 110646702, updated on 10-Oct-2024

Summary

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Gene symbol
LOC110646702
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1
Locus tag
P3X46_033075
Gene type
protein coding
RefSeq status
MODEL
Organism
Hevea brasiliensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Genomic context

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See LOC110646702 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM3005281v1 (GCF_030052815.1) 18 NC_079510.1 (46737884..46750591, complement)
100 previous assembly ASM165405v1 (GCF_001654055.1) Unplaced Scaffold NW_018747086.1 (97929..108889, complement)

Chromosome 18 - NC_079510.1Genomic Context describing neighboring genes Neighboring gene protein S40-1-like Neighboring gene subtilisin-like protease SBT5.6 Neighboring gene uncharacterized LOC131176032 Neighboring gene GDSL esterase/lipase At5g45670-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene expression analysis and SNP/InDel discovery to investigate yield heterosis of two rubber tree F1 hybrids. Li D, et al. Sci Rep, 2016 Apr 25. PMID 27108962, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1
Names
trehalose-6-phosphate synthase-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030052815.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3005281v1 Primary Assembly

Genomic

  1. NC_079510.1 Reference ASM3005281v1 Primary Assembly

    Range
    46737884..46750591 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_058141058.1 → XP_057997041.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 isoform X2

  2. XM_058141059.1 → XP_057997042.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 isoform X4

  3. XM_058141057.1 → XP_057997040.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 isoform X1

  4. XM_021800227.2 → XP_021655919.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 isoform X3

    UniProtKB/TrEMBL
    A0A0S2A6G6, A0A6A6LZ85
    Conserved Domains (1) summary
    PLN03064
    Location:20 → 936
    PLN03064; alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Nucleotide Protein
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