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LOC110644580 sucrose synthase [ Hevea brasiliensis (rubber tree) ]

Gene ID: 110644580, updated on 2-Nov-2023

Summary

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Gene symbol
LOC110644580
Gene description
sucrose synthase
Locus tag
P3X46_007513
Gene type
protein coding
RefSeq status
MODEL
Organism
Hevea brasiliensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Genomic context

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See LOC110644580 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM3005281v1 (GCF_030052815.1) 4 NC_079496.1 (110522336..110528865)
100 previous assembly ASM165405v1 (GCF_001654055.1) Unplaced Scaffold NW_018746884.1 (93860..100285)

Chromosome 4 - NC_079496.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110672738 Neighboring gene small nucleolar RNA R71 Neighboring gene kinesin-like protein NACK2 Neighboring gene pectinesterase Neighboring gene beta-galactosidase Neighboring gene ethylene-responsive transcription factor ERF018

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structure and expression profile of the sucrose synthase gene family in the rubber tree: indicative of roles in stress response and sucrose utilization in the laticifers. Xiao X, et al. FEBS J, 2014 Jan. PMID 24279382
  2. Draft genome sequence of the rubber tree Hevea brasiliensis. Rahman AY, et al. BMC Genomics, 2013 Feb 2. PMID 23375136, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sucrose synthase
Names
sucrose synthase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030052815.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3005281v1 Primary Assembly

Genomic

  1. NC_079496.1 Reference ASM3005281v1 Primary Assembly

    Range
    110522336..110528865
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021797431.2 → XP_021653123.2  sucrose synthase

  2. XM_021797432.2 → XP_021653124.2  sucrose synthase

  3. XM_021797433.2 → XP_021653125.2  sucrose synthase

  4. XM_021797434.2 → XP_021653126.2  sucrose synthase

  5. XM_058145907.1 → XP_058001890.1  sucrose synthase

Nucleotide Protein
Heading Accession and Version

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