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LOC110638060 UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 [ Hevea brasiliensis (rubber tree) ]

Gene ID: 110638060, updated on 2-Nov-2023

Summary

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Gene symbol
LOC110638060
Gene description
UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4
Locus tag
P3X46_003645
Gene type
protein coding
RefSeq status
MODEL
Organism
Hevea brasiliensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Genomic context

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See LOC110638060 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM3005281v1 (GCF_030052815.1) 2 NC_079494.1 (121596710..121599723, complement)
100 previous assembly ASM165405v1 (GCF_001654055.1) Unplaced Scaffold NW_018746510.1 (41375..44335, complement)

Chromosome 2 - NC_079494.1Genomic Context describing neighboring genes Neighboring gene acidic endochitinase Neighboring gene acidic endochitinase-like Neighboring gene uncharacterized LOC110638026 Neighboring gene protein ABIL1 Neighboring gene uncharacterized LOC131176359

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.). Li D, et al. BMC Genomics, 2012 May 18. PMID 22607098, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030052815.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3005281v1 Primary Assembly

Genomic

  1. NC_079494.1 Reference ASM3005281v1 Primary Assembly

    Range
    121596710..121599723 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021788467.2 → XP_021644159.1  UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4

    UniProtKB/TrEMBL
    A0A6A6KQA2
    Conserved Domains (1) summary
    pfam03407
    Location:117 → 336
    Nucleotid_trans; Nucleotide-diphospho-sugar transferase
Nucleotide Protein
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