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LOC110635674 probable xyloglucan 6-xylosyltransferase 5 [ Hevea brasiliensis (rubber tree) ]

Gene ID: 110635674, updated on 2-Nov-2023

Summary

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Gene symbol
LOC110635674
Gene description
probable xyloglucan 6-xylosyltransferase 5
Locus tag
P3X46_031132
Gene type
protein coding
RefSeq status
MODEL
Organism
Hevea brasiliensis
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Genomic context

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See LOC110635674 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_06 current ASM3005281v1 (GCF_030052815.1) 17 NC_079509.1 (10713430..10715510)
100 previous assembly ASM165405v1 (GCF_001654055.1) Unplaced Scaffold NW_018746415.1 (77017..79122)

Chromosome 17 - NC_079509.1Genomic Context describing neighboring genes Neighboring gene vesicle transport v-SNARE 13 Neighboring gene pentatricopeptide repeat-containing protein At5g61370, mitochondrial-like Neighboring gene uncharacterized LOC131175332 Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xyloglucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable xyloglucan 6-xylosyltransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030052815.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3005281v1 Primary Assembly

Genomic

  1. NC_079509.1 Reference ASM3005281v1 Primary Assembly

    Range
    10713430..10715510
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021785102.2 → XP_021640794.2  probable xyloglucan 6-xylosyltransferase 5

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases