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LOC110631398 probable beta-1,4-xylosyltransferase IRX10L [ Manihot esculenta (cassava) ]

Gene ID: 110631398, updated on 30-Nov-2023

Summary

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Gene symbol
LOC110631398
Gene description
probable beta-1,4-xylosyltransferase IRX10L
Locus tag
MANES_14G043900v8
Gene type
protein coding
RefSeq status
MODEL
Organism
Manihot esculenta
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Genomic context

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Location:
chromosome: 14
Exon count:
4
Annotation release Status Assembly Chr Location
101 current M.esculenta_v8 (GCF_001659605.2) 14 NC_035174.2 (3821758..3825166, complement)
100 previous assembly Manihot esculenta v6 (GCF_001659605.1) LG14 NC_035174.1 (3495908..3499361, complement)

Chromosome 14 - NC_035174.2Genomic Context describing neighboring genes Neighboring gene succinate dehydrogenase assembly factor 2, mitochondrial Neighboring gene chromophore lyase CRL, chloroplastic Neighboring gene phosphatidylinositol transfer protein 3 Neighboring gene pentatricopeptide repeat-containing protein At5g50990

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,4-beta-D-xylan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glucuronoxylan glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX10L

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manihot esculenta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M.esculenta_v8 Primary Assembly

Genomic

  1. NC_035174.2 Reference M.esculenta_v8 Primary Assembly

    Range
    3821758..3825166 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021779215.2 → XP_021634907.1  probable beta-1,4-xylosyltransferase IRX10L

    UniProtKB/TrEMBL
    A0A2C9UJQ5, A0A2C9VQC3
    Conserved Domains (1) summary
    pfam03016
    Location:50 → 345
    Exostosin; Exostosin family
Nucleotide Protein
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