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LOC110629504 probable beta-1,3-galactosyltransferase 2 [ Manihot esculenta (cassava) ]

Gene ID: 110629504, updated on 30-Nov-2023

Summary

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Gene symbol
LOC110629504
Gene description
probable beta-1,3-galactosyltransferase 2
Locus tag
MANES_13G069800v8
Gene type
protein coding
RefSeq status
MODEL
Organism
Manihot esculenta
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Genomic context

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See LOC110629504 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
11
Annotation release Status Assembly Chr Location
101 current M.esculenta_v8 (GCF_001659605.2) 13 NC_035173.2 (9813137..9818246, complement)
100 previous assembly Manihot esculenta v6 (GCF_001659605.1) LG13 NC_035173.1 (8028913..8034030, complement)

Chromosome 13 - NC_035173.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122721486 Neighboring gene uncharacterized LOC122721487 Neighboring gene transfer RNA serine (anticodon UGA) Neighboring gene transfer RNA serine (anticodon UGA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,3-galactosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manihot esculenta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M.esculenta_v8 Primary Assembly

Genomic

  1. NC_035173.2 Reference M.esculenta_v8 Primary Assembly

    Range
    9813137..9818246 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021776505.2 → XP_021632197.1  probable beta-1,3-galactosyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A2C9UPT7
    Conserved Domains (1) summary
    PLN03193
    Location:1 → 400
    PLN03193; beta-1,3-galactosyltransferase; Provisional

  2. XM_021776504.2 → XP_021632196.1  probable beta-1,3-galactosyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A2C9UPS3
    Conserved Domains (1) summary
    PLN03193
    Location:1 → 403
    PLN03193; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
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