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LOC110629001 probable galacturonosyltransferase-like 1 [ Manihot esculenta (cassava) ]

Gene ID: 110629001, updated on 30-Nov-2023

Summary

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Gene symbol
LOC110629001
Gene description
probable galacturonosyltransferase-like 1
Locus tag
MANES_13G135500v8
Gene type
protein coding
RefSeq status
MODEL
Organism
Manihot esculenta
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Genomic context

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See LOC110629001 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
1
Annotation release Status Assembly Chr Location
101 current M.esculenta_v8 (GCF_001659605.2) 13 NC_035173.2 (34320874..34322300, complement)
100 previous assembly Manihot esculenta v6 (GCF_001659605.1) LG13 NC_035173.1 (26281308..26282717, complement)

Chromosome 13 - NC_035173.2Genomic Context describing neighboring genes Neighboring gene probable calcium-binding protein CML41 Neighboring gene probable vacuolar amino acid transporter YPQ1 Neighboring gene E3 ubiquitin-protein ligase RNF185 Neighboring gene elongation of fatty acids protein 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manihot esculenta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M.esculenta_v8 Primary Assembly

Genomic

  1. NC_035173.2 Reference M.esculenta_v8 Primary Assembly

    Range
    34320874..34322300 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021775831.2 → XP_021631523.1  probable galacturonosyltransferase-like 1

    UniProtKB/TrEMBL
    A0A2C9URS0
    Conserved Domains (1) summary
    pfam01501
    Location:67 → 325
    Glyco_transf_8; Glycosyl transferase family 8
Nucleotide Protein
Heading Accession and Version

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