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LOC110625307 rhamnogalacturonan I rhamnosyltransferase 1 [ Manihot esculenta (cassava) ]

Gene ID: 110625307, updated on 30-Nov-2023

Summary

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Gene symbol
LOC110625307
Gene description
rhamnogalacturonan I rhamnosyltransferase 1
Locus tag
MANES_01G033200v8
Gene type
protein coding
RefSeq status
MODEL
Organism
Manihot esculenta
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Genomic context

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See LOC110625307 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
101 current M.esculenta_v8 (GCF_001659605.2) 1 NC_035161.2 (6480243..6484811)
100 previous assembly Manihot esculenta v6 (GCF_001659605.1) LG1 NC_035161.1 (5159827..5164283)

Chromosome 1 - NC_035161.2Genomic Context describing neighboring genes Neighboring gene integrin-linked protein kinase 1 Neighboring gene transmembrane emp24 domain-containing protein p24delta9 Neighboring gene ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic Neighboring gene uncharacterized LOC110620286

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rhamnogalacturonan I rhamnosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manihot esculenta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M.esculenta_v8 Primary Assembly

Genomic

  1. NC_035161.2 Reference M.esculenta_v8 Primary Assembly

    Range
    6480243..6484811
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021770924.2 → XP_021626616.1  rhamnogalacturonan I rhamnosyltransferase 1

    UniProtKB/TrEMBL
    A0A2C9WHA1
    Conserved Domains (1) summary
    cd11299
    Location:99 → 423
    O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily
Nucleotide Protein
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