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LOC110624380 cellulose synthase A catalytic subunit 3 [UDP-forming] [ Manihot esculenta (cassava) ]

Gene ID: 110624380, updated on 30-Nov-2023

Summary

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Gene symbol
LOC110624380
Gene description
cellulose synthase A catalytic subunit 3 [UDP-forming]
Locus tag
MANES_10G142600v8
Gene type
protein coding
RefSeq status
MODEL
Organism
Manihot esculenta
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Genomic context

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See LOC110624380 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
15
Annotation release Status Assembly Chr Location
101 current M.esculenta_v8 (GCF_001659605.2) 10 NC_035170.2 (31108190..31115727)
100 previous assembly Manihot esculenta v6 (GCF_001659605.1) LG10 NC_035170.1 (25466230..25473845)

Chromosome 10 - NC_035170.2Genomic Context describing neighboring genes Neighboring gene putative disease resistance protein RGA4 Neighboring gene putative disease resistance protein RGA3 Neighboring gene putative disease resistance protein RGA4 Neighboring gene uncharacterized LOC110624360 Neighboring gene pre-rRNA-processing protein ESF1 Neighboring gene transfer RNA isoleucine (anticodon AAU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 3 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manihot esculenta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M.esculenta_v8 Primary Assembly

Genomic

  1. NC_035170.2 Reference M.esculenta_v8 Primary Assembly

    Range
    31108190..31115727
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021769476.2 → XP_021625168.1  cellulose synthase A catalytic subunit 3 [UDP-forming]

    UniProtKB/TrEMBL
    A0A2C9V680
    Conserved Domains (1) summary
    PLN02638
    Location:1 → 1079
    PLN02638; cellulose synthase A (UDP-forming), catalytic subunit
Nucleotide Protein
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