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LOC110620674 beta-1,4-xylosyltransferase IRX9 [ Manihot esculenta (cassava) ]

Gene ID: 110620674, updated on 30-Nov-2023

Summary

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Gene symbol
LOC110620674
Gene description
beta-1,4-xylosyltransferase IRX9
Locus tag
MANES_08G003900v8
Gene type
protein coding
RefSeq status
MODEL
Organism
Manihot esculenta
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Genomic context

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See LOC110620674 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
101 current M.esculenta_v8 (GCF_001659605.2) 8 NC_035168.2 (654309..656408, complement)
100 previous assembly Manihot esculenta v6 (GCF_001659605.1) LG8 NC_035168.1 (368810..370771, complement)

Chromosome 8 - NC_035168.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110620781 Neighboring gene protein IQ-DOMAIN 2 Neighboring gene importin subunit alpha-9 Neighboring gene lipid phosphate phosphatase gamma

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-xylosyltransferase IRX9
Names
probable beta-1,4-xylosyltransferase IRX9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manihot esculenta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M.esculenta_v8 Primary Assembly

Genomic

  1. NC_035168.2 Reference M.esculenta_v8 Primary Assembly

    Range
    654309..656408 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021764487.2 → XP_021620179.1  beta-1,4-xylosyltransferase IRX9

    UniProtKB/TrEMBL
    A0A2C9VDZ8
    Conserved Domains (1) summary
    cl11394
    Location:1 → 343
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
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