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LOC110620213 probable UDP-arabinopyranose mutase 5 [ Manihot esculenta (cassava) ]

Gene ID: 110620213, updated on 30-Nov-2023

Summary

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Gene symbol
LOC110620213
Gene description
probable UDP-arabinopyranose mutase 5
Locus tag
MANES_08G105100v8
Gene type
protein coding
RefSeq status
MODEL
Organism
Manihot esculenta
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Genomic context

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See LOC110620213 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
101 current M.esculenta_v8 (GCF_001659605.2) 8 NC_035168.2 (34521220..34524460)
100 previous assembly Manihot esculenta v6 (GCF_001659605.1) LG8 NC_035168.1 (27134076..27137311)

Chromosome 8 - NC_035168.2Genomic Context describing neighboring genes Neighboring gene protein PELOTA 1 Neighboring gene uncharacterized LOC110620196 Neighboring gene sterol 3-beta-glucosyltransferase UGT80A2-like Neighboring gene uncharacterized LOC110620776

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-arabinopyranose mutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UDP-L-arabinose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable UDP-arabinopyranose mutase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manihot esculenta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M.esculenta_v8 Primary Assembly

Genomic

  1. NC_035168.2 Reference M.esculenta_v8 Primary Assembly

    Range
    34521220..34524460
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021763847.2 → XP_021619539.1  probable UDP-arabinopyranose mutase 5

    UniProtKB/TrEMBL
    A0A251KCS0
    Conserved Domains (1) summary
    pfam03214
    Location:8 → 344
    RGP; Reversibly glycosylated polypeptide
Nucleotide Protein
Heading Accession and Version

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