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LOC110620135 rhamnogalacturonan I rhamnosyltransferase 1 [ Manihot esculenta (cassava) ]

Gene ID: 110620135, updated on 30-Nov-2023

Summary

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Gene symbol
LOC110620135
Gene description
rhamnogalacturonan I rhamnosyltransferase 1
Locus tag
MANES_01G104100v8
Gene type
protein coding
RefSeq status
MODEL
Organism
Manihot esculenta
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Genomic context

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See LOC110620135 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
101 current M.esculenta_v8 (GCF_001659605.2) 1 NC_035161.2 (30387396..30391097)
100 previous assembly Manihot esculenta v6 (GCF_001659605.1) LG1 NC_035161.1 (22642124..22645823)

Chromosome 1 - NC_035161.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC122724392 Neighboring gene 60S ribosomal protein L7a-2 Neighboring gene transcription factor BIM2 Neighboring gene phosphatidylinositol 4-kinase gamma 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rhamnogalacturonan I rhamnosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manihot esculenta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M.esculenta_v8 Primary Assembly

Genomic

  1. NC_035161.2 Reference M.esculenta_v8 Primary Assembly

    Range
    30387396..30391097
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021763737.2 → XP_021619429.1  rhamnogalacturonan I rhamnosyltransferase 1 isoform X1

    Conserved Domains (1) summary
    cd11299
    Location:105 → 431
    O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily

  2. XM_021763741.2 → XP_021619433.1  rhamnogalacturonan I rhamnosyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A2C9WJF2
    Conserved Domains (1) summary
    cd11299
    Location:105 → 430
    O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily
Nucleotide Protein
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