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LOC110619243 hydroxyproline O-galactosyltransferase GALT6 [ Manihot esculenta (cassava) ]

Gene ID: 110619243, updated on 30-Nov-2023

Summary

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Gene symbol
LOC110619243
Gene description
hydroxyproline O-galactosyltransferase GALT6
Locus tag
MANES_01G192900v8
Gene type
protein coding
RefSeq status
MODEL
Organism
Manihot esculenta
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Genomic context

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See LOC110619243 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
101 current M.esculenta_v8 (GCF_001659605.2) 1 NC_035161.2 (36757166..36763196, complement)
100 previous assembly Manihot esculenta v6 (GCF_001659605.1) LG1 NC_035161.1 (28824178..28830289, complement)

Chromosome 1 - NC_035161.2Genomic Context describing neighboring genes Neighboring gene transfer RNA glycine (anticodon GCC) Neighboring gene putative RING-H2 finger protein ATL21C Neighboring gene glycerol-3-phosphate acyltransferase RAM2 Neighboring gene exocyst complex component EXO84A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase GALT6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manihot esculenta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M.esculenta_v8 Primary Assembly

Genomic

  1. NC_035161.2 Reference M.esculenta_v8 Primary Assembly

    Range
    36757166..36763196 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021762548.2 → XP_021618240.1  hydroxyproline O-galactosyltransferase GALT6

    UniProtKB/TrEMBL
    A0A2C9WNL8
    Conserved Domains (1) summary
    PLN03133
    Location:141 → 649
    PLN03133; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
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