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LOC110617464 callose synthase 10 [ Manihot esculenta (cassava) ]

Gene ID: 110617464, updated on 30-Nov-2023

Summary

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Gene symbol
LOC110617464
Gene description
callose synthase 10
Gene type
protein coding
RefSeq status
MODEL
Organism
Manihot esculenta
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Genomic context

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See LOC110617464 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
51
Annotation release Status Assembly Chr Location
101 current M.esculenta_v8 (GCF_001659605.2) 6 NC_035166.2 (24504850..24557784)
100 previous assembly Manihot esculenta v6 (GCF_001659605.1) LG6 NC_035166.1 (22235988..22289074)

Chromosome 6 - NC_035166.2Genomic Context describing neighboring genes Neighboring gene protein NOI4 Neighboring gene uncharacterized LOC122723777 Neighboring gene GDSL esterase/lipase At3g48460 Neighboring gene E3 ubiquitin-protein ligase AIRP2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manihot esculenta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M.esculenta_v8 Primary Assembly

Genomic

  1. NC_035166.2 Reference M.esculenta_v8 Primary Assembly

    Range
    24504850..24557784
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021760245.2 → XP_021615937.1  callose synthase 10

    UniProtKB/TrEMBL
    A0A2C9VS17
    Conserved Domains (2) summary
    pfam02364
    Location:1023 → 1766
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:344 → 454
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

RNA

  1. XR_006351083.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases