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LOC110615844 beta-1,3-galactosyltransferase GALT1 [ Manihot esculenta (cassava) ]

Gene ID: 110615844, updated on 30-Nov-2023

Summary

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Gene symbol
LOC110615844
Gene description
beta-1,3-galactosyltransferase GALT1
Locus tag
MANES_05G102300v8
Gene type
protein coding
RefSeq status
MODEL
Organism
Manihot esculenta
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Genomic context

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See LOC110615844 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
101 current M.esculenta_v8 (GCF_001659605.2) 5 NC_035165.2 (9561104..9566784)
100 previous assembly Manihot esculenta v6 (GCF_001659605.1) LG5 NC_035165.1 (8707612..8713277, complement)

Chromosome 5 - NC_035165.2Genomic Context describing neighboring genes Neighboring gene extracellular ribonuclease LE Neighboring gene ribonuclease 3 Neighboring gene protein DMP9 Neighboring gene 50S ribosomal protein L18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactose:N-glycan beta-1,3-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase GALT1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manihot esculenta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M.esculenta_v8 Primary Assembly

Genomic

  1. NC_035165.2 Reference M.esculenta_v8 Primary Assembly

    Range
    9561104..9566784
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043956961.1 → XP_043812896.1  beta-1,3-galactosyltransferase GALT1 isoform X2

    Conserved Domains (1) summary
    PLN03133
    Location:1 → 539
    PLN03133; beta-1,3-galactosyltransferase; Provisional

  2. XM_043956960.1 → XP_043812895.1  beta-1,3-galactosyltransferase GALT1 isoform X1

    UniProtKB/TrEMBL
    A0A2C9VV04
    Conserved Domains (1) summary
    PLN03133
    Location:1 → 633
    PLN03133; beta-1,3-galactosyltransferase; Provisional

  3. XM_021758006.2 → XP_021613698.1  beta-1,3-galactosyltransferase GALT1 isoform X1

    UniProtKB/TrEMBL
    A0A2C9VV04
    Conserved Domains (1) summary
    PLN03133
    Location:1 → 633
    PLN03133; beta-1,3-galactosyltransferase; Provisional

  4. XM_021758009.2 → XP_021613701.1  beta-1,3-galactosyltransferase GALT1 isoform X1

    UniProtKB/TrEMBL
    A0A2C9VV04
    Conserved Domains (1) summary
    PLN03133
    Location:1 → 633
    PLN03133; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
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