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LOC110615728 polygalacturonate 4-alpha-galacturonosyltransferase [ Manihot esculenta (cassava) ]

Gene ID: 110615728, updated on 30-Nov-2023

Summary

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Gene symbol
LOC110615728
Gene description
polygalacturonate 4-alpha-galacturonosyltransferase
Locus tag
MANES_05G042200v8
Gene type
protein coding
RefSeq status
MODEL
Organism
Manihot esculenta
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Genomic context

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See LOC110615728 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
101 current M.esculenta_v8 (GCF_001659605.2) 5 NC_035165.2 (3404756..3409826)
100 previous assembly Manihot esculenta v6 (GCF_001659605.1) LG5 NC_035165.1 (3002875..3007942)

Chromosome 5 - NC_035165.2Genomic Context describing neighboring genes Neighboring gene agamous-like MADS-box protein MADS3 Neighboring gene histone deacetylase complex subunit SAP18 Neighboring gene gibberellin 20 oxidase 2 Neighboring gene glyoxylate/hydroxypyruvate reductase HPR3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonate 4-alpha-galacturonosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manihot esculenta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M.esculenta_v8 Primary Assembly

Genomic

  1. NC_035165.2 Reference M.esculenta_v8 Primary Assembly

    Range
    3404756..3409826
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043956832.1 → XP_043812767.1  polygalacturonate 4-alpha-galacturonosyltransferase isoform X1

    Conserved Domains (1) summary
    PLN02910
    Location:86 → 698
    PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase

  2. XM_021757778.2 → XP_021613470.1  polygalacturonate 4-alpha-galacturonosyltransferase isoform X3

    UniProtKB/TrEMBL
    A0A2C9VT76
    Conserved Domains (1) summary
    PLN02910
    Location:86 → 685
    PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase

  3. XM_043956834.1 → XP_043812769.1  polygalacturonate 4-alpha-galacturonosyltransferase isoform X2

    Conserved Domains (1) summary
    PLN02910
    Location:86 → 697
    PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase

  4. XM_021757780.2 → XP_021613472.1  polygalacturonate 4-alpha-galacturonosyltransferase isoform X4

    UniProtKB/TrEMBL
    A0A2C9VUM7
    Conserved Domains (1) summary
    PLN02910
    Location:86 → 684
    PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase

  5. XM_043956833.1 → XP_043812768.1  polygalacturonate 4-alpha-galacturonosyltransferase isoform X1

    Conserved Domains (1) summary
    PLN02910
    Location:86 → 698
    PLN02910; polygalacturonate 4-alpha-galacturonosyltransferase
Nucleotide Protein
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