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LOC110615152 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 [ Manihot esculenta (cassava) ]

Gene ID: 110615152, updated on 30-Nov-2023

Summary

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Gene symbol
LOC110615152
Gene description
UDP-glucuronate:xylan alpha-glucuronosyltransferase 2
Locus tag
MANES_05G173600v8
Gene type
protein coding
RefSeq status
MODEL
Organism
Manihot esculenta
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Genomic context

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See LOC110615152 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
101 current M.esculenta_v8 (GCF_001659605.2) 5 NC_035165.2 (28834351..28837391)
100 previous assembly Manihot esculenta v6 (GCF_001659605.1) LG5 NC_035165.1 (23961014..23963973)

Chromosome 5 - NC_035165.2Genomic Context describing neighboring genes Neighboring gene uncharacterized mitochondrial protein AtMg00810-like Neighboring gene protein TIC 22, chloroplastic Neighboring gene transfer RNA arginine (anticodon CCU) Neighboring gene protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1 Neighboring gene transfer RNA tyrosine (anticodon GUA)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in xylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-glucuronate:xylan alpha-glucuronosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manihot esculenta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M.esculenta_v8 Primary Assembly

Genomic

  1. NC_035165.2 Reference M.esculenta_v8 Primary Assembly

    Range
    28834351..28837391
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021756873.2 → XP_021612565.1  UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A2C9VX67
    Conserved Domains (1) summary
    cd02537
    Location:301 → 545
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen

  2. XM_021756875.2 → XP_021612567.1  UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 isoform X2

    Conserved Domains (1) summary
    cd02537
    Location:234 → 478
    GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
Nucleotide Protein
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