U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC110611728 hydroxyproline O-galactosyltransferase GALT3 [ Manihot esculenta (cassava) ]

Gene ID: 110611728, updated on 30-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC110611728
Gene description
hydroxyproline O-galactosyltransferase GALT3
Locus tag
MANES_03G209300v8
Gene type
protein coding
RefSeq status
MODEL
Organism
Manihot esculenta
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC110611728 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
101 current M.esculenta_v8 (GCF_001659605.2) 3 NC_035163.2 (32449278..32454389, complement)
100 previous assembly Manihot esculenta v6 (GCF_001659605.1) LG3 NC_035163.1 (28914112..28919233, complement)

Chromosome 3 - NC_035163.2Genomic Context describing neighboring genes Neighboring gene dihydrolipoyl dehydrogenase 1, mitochondrial Neighboring gene probable protein phosphatase 2C 13 Neighboring gene uncharacterized LOC110610326 Neighboring gene polygalacturonase At1g48100

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
hydroxyproline O-galactosyltransferase GALT3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Manihot esculenta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M.esculenta_v8 Primary Assembly

Genomic

  1. NC_035163.2 Reference M.esculenta_v8 Primary Assembly

    Range
    32449278..32454389 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021752151.2 → XP_021607843.1  hydroxyproline O-galactosyltransferase GALT3 isoform X1

    UniProtKB/TrEMBL
    A0A2C9WAY6, A0A2C9WBX9
    Conserved Domains (1) summary
    PLN03133
    Location:13 → 651
    PLN03133; beta-1,3-galactosyltransferase; Provisional

  2. XM_021752150.2 → XP_021607842.1  hydroxyproline O-galactosyltransferase GALT3 isoform X1

    UniProtKB/TrEMBL
    A0A2C9WAY6, A0A2C9WBX9
    Conserved Domains (1) summary
    PLN03133
    Location:13 → 651
    PLN03133; beta-1,3-galactosyltransferase; Provisional

  3. XM_043955226.1 → XP_043811161.1  hydroxyproline O-galactosyltransferase GALT3 isoform X1

    UniProtKB/TrEMBL
    A0A2C9WAY6, A0A2C9WBX9
    Conserved Domains (1) summary
    PLN03133
    Location:13 → 651
    PLN03133; beta-1,3-galactosyltransferase; Provisional

  4. XM_021752147.2 → XP_021607839.1  hydroxyproline O-galactosyltransferase GALT3 isoform X1

    UniProtKB/TrEMBL
    A0A2C9WAY6, A0A2C9WBX9
    Conserved Domains (1) summary
    PLN03133
    Location:13 → 651
    PLN03133; beta-1,3-galactosyltransferase; Provisional

  5. XM_043955224.1 → XP_043811159.1  hydroxyproline O-galactosyltransferase GALT3 isoform X1

    UniProtKB/TrEMBL
    A0A2C9WAY6, A0A2C9WBX9
    Conserved Domains (1) summary
    PLN03133
    Location:13 → 651
    PLN03133; beta-1,3-galactosyltransferase; Provisional

  6. XM_043955223.1 → XP_043811158.1  hydroxyproline O-galactosyltransferase GALT3 isoform X1

    UniProtKB/TrEMBL
    A0A2C9WAY6, A0A2C9WBX9
    Conserved Domains (1) summary
    PLN03133
    Location:13 → 651
    PLN03133; beta-1,3-galactosyltransferase; Provisional

  7. XM_043955225.1 → XP_043811160.1  hydroxyproline O-galactosyltransferase GALT3 isoform X1

    UniProtKB/TrEMBL
    A0A2C9WAY6, A0A2C9WBX9
    Conserved Domains (1) summary
    PLN03133
    Location:13 → 651
    PLN03133; beta-1,3-galactosyltransferase; Provisional

  8. XM_043955227.1 → XP_043811162.1  hydroxyproline O-galactosyltransferase GALT3 isoform X2

    UniProtKB/TrEMBL
    A0A2C9WB26, A0A2C9WBX9
    Conserved Domains (1) summary
    PLN03133
    Location:13 → 584
    PLN03133; beta-1,3-galactosyltransferase; Provisional

RNA

  1. XR_006350267.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases