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LOC110609508 probable galacturonosyltransferase 13 [ Manihot esculenta (cassava) ]

Gene ID: 110609508, updated on 30-Nov-2023

Summary

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Gene symbol
LOC110609508
Gene description
probable galacturonosyltransferase 13
Locus tag
MANES_02G051800v8
Gene type
protein coding
RefSeq status
MODEL
Organism
Manihot esculenta
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Genomic context

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See LOC110609508 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
101 current M.esculenta_v8 (GCF_001659605.2) 2 NC_035162.2 (4130356..4137690, complement)
100 previous assembly Manihot esculenta v6 (GCF_001659605.1) LG2 NC_035162.1 (3914120..3920889, complement)

Chromosome 2 - NC_035162.2Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At3g29290 Neighboring gene chaperone protein ClpB3, chloroplastic Neighboring gene membrane-anchored ubiquitin-fold protein 2 Neighboring gene RING-H2 finger protein ATL46 Neighboring gene uncharacterized LOC110603271

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonate 4-alpha-galacturonosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable galacturonosyltransferase 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manihot esculenta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M.esculenta_v8 Primary Assembly

Genomic

  1. NC_035162.2 Reference M.esculenta_v8 Primary Assembly

    Range
    4130356..4137690 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021749117.2 → XP_021604809.1  probable galacturonosyltransferase 13 isoform X4

    UniProtKB/TrEMBL
    A0A2C9WB14, A0A2C9WDN2
    Conserved Domains (1) summary
    PLN02870
    Location:1 → 527
    PLN02870; Probable galacturonosyltransferase

  2. XM_021749116.2 → XP_021604808.2  probable galacturonosyltransferase 13 isoform X3

    UniProtKB/TrEMBL
    A0A2C9WDN2
    Conserved Domains (1) summary
    PLN02870
    Location:1 → 528
    PLN02870; Probable galacturonosyltransferase

  3. XM_021749115.2 → XP_021604807.1  probable galacturonosyltransferase 13 isoform X2

    UniProtKB/TrEMBL
    A0A2C9WBF1, A0A2C9WDD2
    Conserved Domains (1) summary
    PLN02870
    Location:1 → 535
    PLN02870; Probable galacturonosyltransferase

  4. XM_021749114.2 → XP_021604806.2  probable galacturonosyltransferase 13 isoform X1

    UniProtKB/TrEMBL
    A0A2C9WDD2
    Conserved Domains (1) summary
    PLN02870
    Location:1 → 536
    PLN02870; Probable galacturonosyltransferase
Nucleotide Protein
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