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LOC110606637 probable beta-1,4-xylosyltransferase IRX9H [ Manihot esculenta (cassava) ]

Gene ID: 110606637, updated on 30-Nov-2023

Summary

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Gene symbol
LOC110606637
Gene description
probable beta-1,4-xylosyltransferase IRX9H
Locus tag
MANES_18G054400v8
Gene type
protein coding
RefSeq status
MODEL
Organism
Manihot esculenta
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Genomic context

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See LOC110606637 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
3
Annotation release Status Assembly Chr Location
101 current M.esculenta_v8 (GCF_001659605.2) 18 NC_035178.2 (4621493..4624906)
100 previous assembly Manihot esculenta v6 (GCF_001659605.1) LG18 NC_035178.1 (4571218..4574666)

Chromosome 18 - NC_035178.2Genomic Context describing neighboring genes Neighboring gene sucrose transport protein SUC4 Neighboring gene protein DETOXIFICATION 48 Neighboring gene uncharacterized LOC110606635 Neighboring gene ubiquitin-fold modifier-conjugating enzyme 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,4-xylosyltransferase IRX9H

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manihot esculenta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M.esculenta_v8 Primary Assembly

Genomic

  1. NC_035178.2 Reference M.esculenta_v8 Primary Assembly

    Range
    4621493..4624906
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021745537.2 → XP_021601229.2  probable beta-1,4-xylosyltransferase IRX9H

    UniProtKB/TrEMBL
    A0A251J524
    Conserved Domains (1) summary
    cd00218
    Location:166 → 395
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  2. XM_021745538.2 → XP_021601230.2  probable beta-1,4-xylosyltransferase IRX9H

    UniProtKB/TrEMBL
    A0A251J524
    Conserved Domains (1) summary
    cd00218
    Location:166 → 395
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  3. XM_021745539.2 → XP_021601231.2  probable beta-1,4-xylosyltransferase IRX9H

    UniProtKB/TrEMBL
    A0A251J524
    Conserved Domains (1) summary
    cd00218
    Location:166 → 395
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis
Nucleotide Protein
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