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LOC110602420 alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5 [ Manihot esculenta (cassava) ]

Gene ID: 110602420, updated on 30-Nov-2023

Summary

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Gene symbol
LOC110602420
Gene description
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5
Locus tag
MANES_15G182200v8
Gene type
protein coding
RefSeq status
MODEL
Organism
Manihot esculenta
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Genomic context

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See LOC110602420 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
4
Annotation release Status Assembly Chr Location
101 current M.esculenta_v8 (GCF_001659605.2) 15 NC_035175.2 (25759220..25765093, complement)
100 previous assembly Manihot esculenta v6 (GCF_001659605.1) LG15 NC_035175.1 (19928801..19933514)

Chromosome 15 - NC_035175.2Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA snoR114 Neighboring gene uncharacterized LOC122721995 Neighboring gene probable ADP-ribosylation factor GTPase-activating protein AGD8 Neighboring gene transfer RNA glycine (anticodon GCC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manihot esculenta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M.esculenta_v8 Primary Assembly

Genomic

  1. NC_035175.2 Reference M.esculenta_v8 Primary Assembly

    Range
    25759220..25765093 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043951246.1 → XP_043807181.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

    UniProtKB/TrEMBL
    A0A2C9UH48
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 845
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  2. XM_043951245.1 → XP_043807180.1  alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5

    UniProtKB/TrEMBL
    A0A2C9UH48
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 845
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Nucleotide Protein
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