U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC110599614 probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10 [ Manihot esculenta (cassava) ]

Gene ID: 110599614, updated on 30-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC110599614
Gene description
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10
Locus tag
MANES_14G067800v8
Gene type
protein coding
RefSeq status
MODEL
Organism
Manihot esculenta
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC110599614 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
5
Annotation release Status Assembly Chr Location
101 current M.esculenta_v8 (GCF_001659605.2) 14 NC_035174.2 (5647908..5656102)
100 previous assembly Manihot esculenta v6 (GCF_001659605.1) LG14 NC_035174.1 (5529536..5535586)

Chromosome 14 - NC_035174.2Genomic Context describing neighboring genes Neighboring gene aldehyde dehydrogenase family 2 member B4, mitochondrial Neighboring gene spermidine synthase 1 Neighboring gene RNA-dependent RNA polymerase 2 Neighboring gene RING-H2 finger protein ATL46

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in trehalose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in trehalose metabolism in response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Manihot esculenta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M.esculenta_v8 Primary Assembly

Genomic

  1. NC_035174.2 Reference M.esculenta_v8 Primary Assembly

    Range
    5647908..5656102
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021736084.2 → XP_021591776.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10

    UniProtKB/TrEMBL
    A0A251J9V7
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 847
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  2. XM_043950287.1 → XP_043806222.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10

    UniProtKB/TrEMBL
    A0A251J9V7
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 847
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]

  3. XM_021736081.2 → XP_021591773.1  probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 10

    UniProtKB/TrEMBL
    A0A251J9V7
    Conserved Domains (1) summary
    PLN02205
    Location:1 → 847
    PLN02205; alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases