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HCFC1 host cell factor C1 [ Neomonachus schauinslandi (Hawaiian monk seal) ]

Gene ID: 110574516, updated on 15-Mar-2024

Summary

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Gene symbol
HCFC1
Gene description
host cell factor C1
See related
EnsemblRapid:ENSNSCG00000005372
Gene type
protein coding
RefSeq status
MODEL
Organism
Neomonachus schauinslandi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Neomonachus
Orthologs
human mouse all
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Genomic context

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See HCFC1 in Genome Data Viewer
Location:
chromosome: X
Exon count:
26
Annotation release Status Assembly Chr Location
101 current ASM220157v2 (GCF_002201575.2) X NC_058419.1 (1579415..1603933)
100 previous assembly ASM220157v1 (GCF_002201575.1) X Unlocalized Scaffold NW_018726547.1 (1601573..1621678)

Chromosome X - NC_058419.1Genomic Context describing neighboring genes Neighboring gene interleukin 1 receptor associated kinase 1 Neighboring gene transmembrane protein 187 Neighboring gene renin binding protein Neighboring gene Rho GTPase activating protein 4 Neighboring gene arginine vasopressin receptor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neomonachus schauinslandi Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM220157v2

Genomic

  1. NC_058419.1 Reference ASM220157v2

    Range
    1579415..1603933
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_044911658.1 → XP_044767593.1  host cell factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M1M571
    Conserved Domains (4) summary
    PHA03255
    Location:683 → 823
    PHA03255; BDLF3; Provisional
    PLN02193
    Location:10 → 322
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1920 → 1949
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]

  2. XM_044911659.1 → XP_044767594.1  host cell factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A8M1M8Y1
    Conserved Domains (4) summary
    PHA03255
    Location:683 → 823
    PHA03255; BDLF3; Provisional
    PLN02193
    Location:10 → 322
    PLN02193; nitrile-specifier protein
    cd00063
    Location:1875 → 1904
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:200 → 253
    Kelch; KELCH repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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