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Chpf2 chondroitin polymerizing factor 2 [ Meriones unguiculatus (Mongolian gerbil) ]

Gene ID: 110562863, updated on 15-Mar-2024

Summary

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Gene symbol
Chpf2
Gene description
chondroitin polymerizing factor 2
See related
EnsemblRapid:ENSMUGG00015016821
Gene type
protein coding
RefSeq status
MODEL
Organism
Meriones unguiculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Gerbillinae; Meriones
Orthologs
human mouse all
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Genomic context

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See Chpf2 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current Bangor_MerUng_6.1 (GCF_030254825.1) 21 NC_083368.1 (16671038..16676496, complement)
100 previous assembly MunDraft-v1.0 (GCF_002204375.1) Unplaced Scaffold NW_018659837.1 (204911..210433, complement)

Chromosome 21 - NC_083368.1Genomic Context describing neighboring genes Neighboring gene glycerol-3-phosphate dehydrogenase 1-like protein Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit D3 Neighboring gene uncharacterized LOC132649698 Neighboring gene ATP binding cassette subfamily F member 2 Neighboring gene large ribosomal subunit protein eL39-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate glucuronyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030254825.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bangor_MerUng_6.1

Genomic

  1. NC_083368.1 Reference Bangor_MerUng_6.1

    Range
    16671038..16676496 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021659749.2 → XP_021515424.1  chondroitin sulfate glucuronyltransferase

    Related
    ENSMUGP00015023393.1, ENSMUGT00015030538.1
    Conserved Domains (2) summary
    pfam05679
    Location:248 → 763
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:183 → 275
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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