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C1galt1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [ Meriones unguiculatus (Mongolian gerbil) ]

Gene ID: 110554784, updated on 15-Mar-2024

Summary

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Gene symbol
C1galt1
Gene description
core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
See related
EnsemblRapid:ENSMUGG00015015114
Gene type
protein coding
RefSeq status
MODEL
Organism
Meriones unguiculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Gerbillinae; Meriones
Orthologs
human mouse all
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Genomic context

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See C1galt1 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_10 current Bangor_MerUng_6.1 (GCF_030254825.1) 21 NC_083368.1 (37894678..37963167)
100 previous assembly MunDraft-v1.0 (GCF_002204375.1) Unplaced Scaffold NW_018658344.1 (438157..464986)

Chromosome 21 - NC_083368.1Genomic Context describing neighboring genes Neighboring gene protein SET-like Neighboring gene asparagine synthetase (glutamine-hydrolyzing) Neighboring gene U6 spliceosomal RNA Neighboring gene collagen type XXVIII alpha 1 chain Neighboring gene uncharacterized LOC132649684 Neighboring gene meiosis regulator for oocyte development

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030254825.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bangor_MerUng_6.1

Genomic

  1. NC_083368.1 Reference Bangor_MerUng_6.1

    Range
    37894678..37963167
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_060374013.1 → XP_060229996.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X2

  2. XM_060374010.1 → XP_060229993.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X1

  3. XM_060374014.1 → XP_060229997.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X3

    Related
    ENSMUGP00015020628.1, ENSMUGT00015027353.1

  4. XM_060374015.1 → XP_060229998.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X5

  5. XM_060374017.1 → XP_060230000.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X7

  6. XM_060374016.1 → XP_060229999.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X6

  7. XM_060374018.1 → XP_060230001.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X8

    Related
    ENSMUGP00015020624.1, ENSMUGT00015027349.1

  8. XM_021647619.2 → XP_021503294.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X4

    Related
    ENSMUGP00015020618.1, ENSMUGT00015027343.1
    Conserved Domains (1) summary
    cl21608
    Location:115 → 256
    Galactosyl_T; Galactosyltransferase

  9. XM_060374011.1 → XP_060229994.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X2

  10. XM_060374012.1 → XP_060229995.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X2

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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