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LOC110538403 kin of IRRE-like protein 3 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110538403, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110538403
Gene description
kin of IRRE-like protein 3
See related
Ensembl:ENSOMYG00000026073
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110538403 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
15
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 2 NC_048566.1 (23559422..23607871, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 2 NC_035078.1 (8856228..8900045, complement)

Chromosome 2 - NC_048566.1Genomic Context describing neighboring genes Neighboring gene amyloid-like protein 1 Neighboring gene ST14 transmembrane serine protease matriptase Neighboring gene NPHS1 adhesion molecule, nephrin Neighboring gene intercellular adhesion molecule 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1; kin of IRRE-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048566.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    23559422..23607871 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021625234.2 → XP_021480909.1  kin of IRRE-like protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A8C7S083
    Conserved Domains (4) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    pfam13895
    Location:223 → 292
    Ig_2; Immunoglobulin domain
    cl11960
    Location:388 → 485
    Ig; Immunoglobulin domain
    cl28434
    Location:305 → 386
    I-set; Immunoglobulin I-set domain

  2. XM_021625209.2 → XP_021480884.1  kin of IRRE-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7S083
    Conserved Domains (4) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    pfam13895
    Location:223 → 292
    Ig_2; Immunoglobulin domain
    cl11960
    Location:388 → 485
    Ig; Immunoglobulin domain
    cl28434
    Location:305 → 386
    I-set; Immunoglobulin I-set domain

  3. XM_021625259.2 → XP_021480934.1  kin of IRRE-like protein 3 isoform X7

    UniProtKB/TrEMBL
    A0A8C7S083
    Conserved Domains (4) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    pfam13895
    Location:223 → 292
    Ig_2; Immunoglobulin domain
    cl11960
    Location:388 → 485
    Ig; Immunoglobulin domain
    cl28434
    Location:305 → 386
    I-set; Immunoglobulin I-set domain

  4. XM_021625225.2 → XP_021480900.1  kin of IRRE-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C7S083
    Conserved Domains (4) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    pfam13895
    Location:223 → 292
    Ig_2; Immunoglobulin domain
    cl11960
    Location:388 → 485
    Ig; Immunoglobulin domain
    cl28434
    Location:305 → 386
    I-set; Immunoglobulin I-set domain

  5. XM_021625267.2 → XP_021480942.1  kin of IRRE-like protein 3 isoform X8

    UniProtKB/TrEMBL
    A0A8C7S083
    Related
    ENSOMYP00000056580.2, ENSOMYT00000061601.2
    Conserved Domains (4) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    pfam13895
    Location:223 → 292
    Ig_2; Immunoglobulin domain
    cl11960
    Location:388 → 485
    Ig; Immunoglobulin domain
    cl28434
    Location:305 → 386
    I-set; Immunoglobulin I-set domain

  6. XM_021625249.2 → XP_021480924.1  kin of IRRE-like protein 3 isoform X6

    UniProtKB/TrEMBL
    A0A8C7S083
    Conserved Domains (4) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    pfam13895
    Location:223 → 302
    Ig_2; Immunoglobulin domain
    cl11960
    Location:388 → 485
    Ig; Immunoglobulin domain
    cl28434
    Location:305 → 386
    I-set; Immunoglobulin I-set domain

  7. XM_021625241.2 → XP_021480916.1  kin of IRRE-like protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8C7RPL8, A0A8C7S083
    Related
    ENSOMYP00000056624.2, ENSOMYT00000061645.2
    Conserved Domains (4) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    pfam13895
    Location:223 → 292
    Ig_2; Immunoglobulin domain
    cl11960
    Location:388 → 485
    Ig; Immunoglobulin domain
    cl28434
    Location:305 → 386
    I-set; Immunoglobulin I-set domain

  8. XM_021625218.2 → XP_021480893.1  kin of IRRE-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C7S083
    Conserved Domains (4) summary
    cd05759
    Location:135 → 216
    Ig2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)
    pfam13895
    Location:223 → 292
    Ig_2; Immunoglobulin domain
    cl11960
    Location:388 → 485
    Ig; Immunoglobulin domain
    cl28434
    Location:305 → 386
    I-set; Immunoglobulin I-set domain
Nucleotide Protein
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