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lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110538231, updated on 14-Dec-2023

Summary

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Gene symbol
lfng
Gene description
LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
See related
Ensembl:ENSOMYG00000012777
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See lfng in Genome Data Viewer
Location:
chromosome: 12
Exon count:
7
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 12 NC_048576.1 (71560690..71568780)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 12 NC_035088.1 (68340728..68348928)

Chromosome 12 - NC_048576.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S11 Neighboring gene small nucleolar RNA SNORD35 Neighboring gene small nucleolar RNA SNORD35 Neighboring gene tweety family member 3a Neighboring gene sorting nexin-8 Neighboring gene transfer RNA alanine (anticodon UGC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Salem M, et al. BMC Genomics, 2010 Oct 13. PMID 20942956, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pattern specification process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-N-acetylglucosaminyltransferase lunatic fringe

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048576.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    71560690..71568780
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021624922.2 → XP_021480597.1  beta-1,3-N-acetylglucosaminyltransferase lunatic fringe

    UniProtKB/TrEMBL
    A0A8C7PUF7, A0A8C7VK75
    Related
    ENSOMYP00000027082.1, ENSOMYT00000029605.2
    Conserved Domains (1) summary
    pfam02434
    Location:110 → 359
    Fringe; Fringe-like
Nucleotide Protein
Heading Accession and Version

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