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LOC110538060 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110538060, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110538060
Gene description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1
See related
Ensembl:ENSOMYG00000044009
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110538060 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
6
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 12 NC_048576.1 (66030499..66056581, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 12 NC_035088.1 (62872559..62891236, complement)

Chromosome 12 - NC_048576.1Genomic Context describing neighboring genes Neighboring gene interferon a3-like Neighboring gene interferon epsilon Neighboring gene globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 Neighboring gene integrin alpha-3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048576.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    66030499..66056581 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036938101.1 → XP_036793996.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C7UAE4
    Conserved Domains (1) summary
    cl11394
    Location:28 → 297
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_036938102.1 → XP_036793997.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 isoform X4

    UniProtKB/TrEMBL
    A0A8C7UQP3
    Conserved Domains (1) summary
    cl11394
    Location:7 → 276
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_021624619.2 → XP_021480294.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C7US77
    Conserved Domains (1) summary
    cl11394
    Location:30 → 299
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  4. XM_021624618.2 → XP_021480293.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A060YAJ5, A0A8C7UAF6, A0A8C7US77
    Related
    ENSOMYP00000096719.2, ENSOMYT00000105066.2
    Conserved Domains (1) summary
    cl11394
    Location:35 → 304
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  5. XM_021624621.2 → XP_021480296.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 isoform X4

    UniProtKB/TrEMBL
    A0A8C7UQP3
    Conserved Domains (1) summary
    cl11394
    Location:7 → 276
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
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