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colgalt1a collagen beta(1-O)galactosyltransferase 1a [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110537992, updated on 15-Mar-2024

Summary

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Gene symbol
colgalt1a
Gene description
collagen beta(1-O)galactosyltransferase 1a
See related
Ensembl:ENSOMYG00000039960
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
zebrafish all
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Genomic context

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See colgalt1a in Genome Data Viewer
Location:
chromosome: 12
Exon count:
13
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 12 NC_048576.1 (63737730..63765619, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 12 NC_035088.1 (60393716..60424053, complement)

Chromosome 12 - NC_048576.1Genomic Context describing neighboring genes Neighboring gene LIM homeobox transcription factor 1, alpha-like Neighboring gene GEM interacting protein Neighboring gene RB-associated KRAB zinc finger protein Neighboring gene zinc finger protein 572 Neighboring gene 6-phosphogluconolactonase Neighboring gene peroxisomal membrane protein PMP34-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables procollagen galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procollagen galactosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048576.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    63737730..63765619 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036938061.1 → XP_036793956.1  procollagen galactosyltransferase 1

    UniProtKB/TrEMBL
    A0A8C7WAM4, A0A8K9XSB2
    Related
    ENSOMYP00000086326.2, ENSOMYT00000094069.2
    Conserved Domains (2) summary
    cd00761
    Location:42 → 157
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    cl01298
    Location:326 → 511
    Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...

RNA

  1. XR_005035073.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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