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LOC110537515 delta-sarcoglycan [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110537515, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110537515
Gene description
delta-sarcoglycan
See related
Ensembl:ENSOMYG00000028013
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110537515 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
9
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 12 NC_048576.1 (35738287..36089854)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 12 NC_035088.1 (31972875..32327843)

Chromosome 12 - NC_048576.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110524522 Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene rho GTPase-activating protein 7 Neighboring gene arginine--tRNA ligase, cytoplasmic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Salem M, et al. BMC Genomics, 2010 Oct 13. PMID 20942956, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048576.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    35738287..36089854
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021623618.2 → XP_021479293.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A8C7S3N0
    Related
    ENSOMYP00000060722.1, ENSOMYT00000066108.2
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_021623616.2 → XP_021479291.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A8C7S3N0
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases