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LOC110537053 beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110537053, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110537053
Gene description
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4
See related
Ensembl:ENSOMYG00000036065
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110537053 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
2
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 12 NC_048576.1 (15950978..15956658)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 12 NC_035088.1 (12669324..12674974)

Chromosome 12 - NC_048576.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase Praja-2 Neighboring gene tyrosine-protein kinase Fer Neighboring gene family with sequence similarity 169 member Ab Neighboring gene LIM/homeobox protein Lhx5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048576.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    15950978..15956658
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021622772.2 → XP_021478447.2  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    UniProtKB/TrEMBL
    A0A8C7T9B8
    Related
    ENSOMYP00000077981.2, ENSOMYT00000084902.2
    Conserved Domains (1) summary
    cl27418
    Location:126 → 394
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein
Heading Accession and Version

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