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LOC110537010 chondroitin sulfate N-acetylgalactosaminyltransferase 1 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110537010, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110537010
Gene description
chondroitin sulfate N-acetylgalactosaminyltransferase 1
See related
Ensembl:ENSOMYG00000026841
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110537010 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
7
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 12 NC_048576.1 (14120153..14155328, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 12 NC_035088.1 (10917594..10957252, complement)

Chromosome 12 - NC_048576.1Genomic Context describing neighboring genes Neighboring gene exosome RNA helicase MTR4 Neighboring gene small nucleolar RNA SNORA35 Neighboring gene phospholipid phosphatase 1a Neighboring gene spindlin-Z Neighboring gene tip elongation aberrant protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048576.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    14120153..14155328 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021622710.2 → XP_021478385.2  chondroitin sulfate N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A8C7RZM2
    Related
    ENSOMYP00000058143.2, ENSOMYT00000063295.2
    Conserved Domains (1) summary
    cl11394
    Location:195 → 568
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases