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LOC110536648 alpha-(1,3)-fucosyltransferase 7-like [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110536648, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110536648
Gene description
alpha-(1,3)-fucosyltransferase 7-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110536648 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
1
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 11 NC_048575.1 (72595357..72596915)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 11 NC_035087.1 (69138080..69139632)

Chromosome 11 - NC_048575.1Genomic Context describing neighboring genes Neighboring gene protein PAXX Neighboring gene ATP-binding cassette sub-family A member 2 Neighboring gene neural proliferation differentiation and control protein 1 Neighboring gene protein Niban 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-(1->3)-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fucosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-(1,3)-fucosyltransferase 7-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048575.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    72595357..72596915
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021622380.2 → XP_021478055.1  alpha-(1,3)-fucosyltransferase 7-like

    UniProtKB/TrEMBL
    A0A060Y3V1
    Conserved Domains (2) summary
    pfam00852
    Location:174 → 340
    Glyco_transf_10; Glycosyltransferase family 10 (fucosyltransferase) C-term
    pfam17039
    Location:39 → 149
    Glyco_tran_10_N; Fucosyltransferase, N-terminal
Nucleotide Protein
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