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LOC110536415 beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110536415, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110536415
Gene description
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4
See related
Ensembl:ENSOMYG00000014769
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110536415 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
8
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 11 NC_048575.1 (77139958..77149206)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 11 NC_035087.1 (73245198..73252964)

Chromosome 11 - NC_048575.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110535120 Neighboring gene ankyrin repeat domain-containing protein 31 Neighboring gene family with sequence similarity 169 member Aa Neighboring gene titin-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048575.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    77139958..77149206
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036936409.1 → XP_036792304.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    UniProtKB/TrEMBL
    A0A060XP28, A0A8C7Q441
    Related
    ENSOMYP00000031548.2, ENSOMYT00000034393.2
    Conserved Domains (1) summary
    cl27418
    Location:124 → 393
    Branch; Core-2/I-Branching enzyme

  2. XM_036936410.1 → XP_036792305.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    UniProtKB/TrEMBL
    A0A060XP28, A0A8C7Q441
    Conserved Domains (1) summary
    cl27418
    Location:124 → 393
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein
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