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LOC110536406 tight junction protein ZO-2 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110536406, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110536406
Gene description
tight junction protein ZO-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
tjp2
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Genomic context

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See LOC110536406 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
26
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 11 NC_048575.1 (76396096..76600566)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 11 NC_035087.1 (72573645..72753491)

Chromosome 11 - NC_048575.1Genomic Context describing neighboring genes Neighboring gene metal transporter CNNM4 Neighboring gene frataxin Neighboring gene protein FAM189A2-like Neighboring gene amyloid-beta A4 precursor protein-binding family A member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment of endothelial intestinal barrier IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of blood-brain barrier permeability IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tight junction protein ZO-2
Names
tight junction protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048575.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    76396096..76600566
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036936386.1 → XP_036792281.1  tight junction protein ZO-2 isoform X1

    UniProtKB/TrEMBL
    A0A8C7PXR5
    Conserved Domains (3) summary
    smart00072
    Location:726 → 904
    GuKc; Guanylate kinase homologues
    cd00992
    Location:41 → 126
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl17036
    Location:627 → 692
    SH3; Src Homology 3 domain superfamily

  2. XM_036936389.1 → XP_036792284.1  tight junction protein ZO-2 isoform X4

    Conserved Domains (3) summary
    smart00072
    Location:726 → 904
    GuKc; Guanylate kinase homologues
    cd00992
    Location:41 → 126
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl17036
    Location:627 → 692
    SH3; Src Homology 3 domain superfamily

  3. XM_036936388.1 → XP_036792283.1  tight junction protein ZO-2 isoform X3

    UniProtKB/TrEMBL
    A0A8C7PXR5
    Conserved Domains (3) summary
    smart00072
    Location:694 → 872
    GuKc; Guanylate kinase homologues
    cd00992
    Location:9 → 94
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl17036
    Location:595 → 660
    SH3; Src Homology 3 domain superfamily

  4. XM_036936387.1 → XP_036792282.1  tight junction protein ZO-2 isoform X2

    UniProtKB/TrEMBL
    A0A8C7PXR5
    Conserved Domains (3) summary
    smart00072
    Location:717 → 895
    GuKc; Guanylate kinase homologues
    cd00992
    Location:32 → 117
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl17036
    Location:618 → 683
    SH3; Src Homology 3 domain superfamily
Nucleotide Protein
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