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LOC110534188 bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110534188, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110534188
Gene description
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1
See related
Ensembl:ENSOMYG00000047276
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110534188 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
17
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 10 NC_048574.1 (49318598..49425142, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 10 NC_035086.1 (45103663..45140784, complement)

Chromosome 10 - NC_048574.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S14 Neighboring gene uncharacterized LOC110534187 Neighboring gene pre-mRNA-splicing factor RBM22 Neighboring gene ADP-ribosylation factor-like protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048574.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    49318598..49425142 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036933298.1 → XP_036789193.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1

    UniProtKB/TrEMBL
    A0A8C7V5R2
    Related
    ENSOMYP00000105545.2, ENSOMYT00000114387.2
    Conserved Domains (2) summary
    pfam00685
    Location:618 → 868
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:32 → 528
    HSNSD; heparan sulfate-N-deacetylase

  2. XM_036933299.1 → XP_036789194.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1

    UniProtKB/TrEMBL
    A0A8C7V5R2
    Related
    ENSOMYP00000093244.2, ENSOMYT00000101409.2
    Conserved Domains (2) summary
    pfam00685
    Location:618 → 868
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:32 → 528
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
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