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alg13 ALG13 UDP-N-acetylglucosaminyltransferase subunit [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110534167, updated on 15-Mar-2024

Summary

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Gene symbol
alg13
Gene description
ALG13 UDP-N-acetylglucosaminyltransferase subunit
See related
Ensembl:ENSOMYG00000046447
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
zebrafish all
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Genomic context

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See alg13 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
24
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 10 NC_048574.1 (48626002..48634602, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 10 NC_035086.1 (44450538..44459122, complement)

Chromosome 10 - NC_048574.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118936701 Neighboring gene short transient receptor potential channel 5 Neighboring gene dachshund a Neighboring gene uncharacterized LOC118936702 Neighboring gene CHM Rab escort protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048574.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    48626002..48634602 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036933278.1 → XP_036789173.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X3

    UniProtKB/TrEMBL
    A0A060XEF1
    Conserved Domains (2) summary
    cl02573
    Location:278 → 354
    Tudor_SF; Tudor domain superfamily
    cl19932
    Location:29 → 142
    OTU; OTU-like cysteine protease

  2. XM_021618874.2 → XP_021474549.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X2

    UniProtKB/TrEMBL
    A0A060XEF1, A0A8C7UPR7
    Related
    ENSOMYP00000103228.1, ENSOMYT00000111941.2
    Conserved Domains (2) summary
    cd04508
    Location:286 → 334
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl19932
    Location:29 → 142
    OTU; OTU-like cysteine protease

  3. XM_021618873.2 → XP_021474548.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X1

    UniProtKB/TrEMBL
    A0A060XEF1
    Conserved Domains (2) summary
    cd04508
    Location:286 → 334
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
    cl19932
    Location:29 → 142
    OTU; OTU-like cysteine protease

  4. XM_021618875.2 → XP_021474550.1  putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13 isoform X4

    UniProtKB/TrEMBL
    A0A060XEF1
    Conserved Domains (1) summary
    cd04508
    Location:258 → 306
    TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
Nucleotide Protein
Heading Accession and Version

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