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LOC110533613 delta-sarcoglycan [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110533613, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110533613
Gene description
delta-sarcoglycan
See related
Ensembl:ENSOMYG00000019679
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110533613 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
9
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 10 NC_048574.1 (28908391..29166800, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 10 NC_035086.1 (24946483..25195555, complement)

Chromosome 10 - NC_048574.1Genomic Context describing neighboring genes Neighboring gene rho GTPase-activating protein 7 Neighboring gene arginyl-tRNA synthetase 1 Neighboring gene uncharacterized LOC118936921 Neighboring gene gem (nuclear organelle) associated protein 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Salem M, et al. BMC Genomics, 2010 Oct 13. PMID 20942956, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048574.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    28908391..29166800 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021618007.2 → XP_021473682.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A8C7QY42
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 277
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_021618006.2 → XP_021473681.1  delta-sarcoglycan

    UniProtKB/TrEMBL
    A0A8C7QY42
    Related
    ENSOMYP00000042634.1, ENSOMYT00000046502.2
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 277
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases