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kirrel3a kirre like nephrin family adhesion molecule 3a [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110533425, updated on 15-Mar-2024

Summary

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Gene symbol
kirrel3a
Gene description
kirre like nephrin family adhesion molecule 3a
See related
Ensembl:ENSOMYG00000030220
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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See kirrel3a in Genome Data Viewer
Location:
chromosome: 10
Exon count:
16
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 10 NC_048574.1 (16657041..16929386, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 10 NC_035086.1 (12749880..13021684, complement)

Chromosome 10 - NC_048574.1Genomic Context describing neighboring genes Neighboring gene CXADR-like membrane protein Neighboring gene small fragment nuclease Neighboring gene uncharacterized LOC118966710 Neighboring gene somatolactin beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synapse assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048574.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    16657041..16929386 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021617614.2 → XP_021473289.2  kin of IRRE-like protein 3 isoform X2

    UniProtKB/TrEMBL
    A0A8C7SGA8
    Related
    ENSOMYP00000067587.2, ENSOMYT00000073616.2
    Conserved Domains (5) summary
    smart00410
    Location:25 → 114
    IG_like; Immunoglobulin like
    cd00096
    Location:314 → 318
    Ig; Ig strand A' [structural motif]
    cd05759
    Location:120 → 217
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cd05898
    Location:389 → 486
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:306 → 387
    Ig; Immunoglobulin domain

  2. XM_021617613.2 → XP_021473288.2  kin of IRRE-like protein 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C7SGA8
    Conserved Domains (5) summary
    smart00409
    Location:25 → 114
    IG; Immunoglobulin
    cd00096
    Location:314 → 318
    Ig; Ig strand A' [structural motif]
    cd05759
    Location:120 → 217
    IgI_2_KIRREL3-like; Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3, and similar domains; member of the I-set of Ig superfamily (IgSF) domains
    cd05898
    Location:392 → 489
    IgI_5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein; member of the I-set of Ig superfamily (IgSF) domains
    cl11960
    Location:306 → 390
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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