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LOC110532725 polypeptide N-acetylgalactosaminyltransferase 6 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110532725, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110532725
Gene description
polypeptide N-acetylgalactosaminyltransferase 6
See related
Ensembl:ENSOMYG00000018610
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110532725 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
12
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 9 NC_048573.1 (67298005..67322378, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 9 NC_035085.1 (59561576..59583552, complement)

Chromosome 9 - NC_048573.1Genomic Context describing neighboring genes Neighboring gene ceramide kinase Neighboring gene glucose-6-phosphate 1-dehydrogenase Neighboring gene adenylate cyclase type 6 Neighboring gene voltage-dependent L-type calcium channel subunit beta-4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048573.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    67298005..67322378 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036988782.1 → XP_036844677.1  polypeptide N-acetylgalactosaminyltransferase 6

    UniProtKB/TrEMBL
    A0A060WLR8
    Related
    ENSOMYP00000040315.2, ENSOMYT00000044017.2
    Conserved Domains (2) summary
    cd02510
    Location:180 → 485
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:498 → 622
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_036988781.1 → XP_036844676.1  polypeptide N-acetylgalactosaminyltransferase 6

    UniProtKB/TrEMBL
    A0A060WLR8
    Related
    ENSOMYP00000040358.1, ENSOMYT00000044066.2
    Conserved Domains (2) summary
    cd02510
    Location:180 → 485
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:498 → 622
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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