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LOC110532694 beta-1,4 N-acetylgalactosaminyltransferase 1 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110532694, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110532694
Gene description
beta-1,4 N-acetylgalactosaminyltransferase 1
See related
Ensembl:ENSOMYG00000014269
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110532694 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
12
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 9 NC_048573.1 (66081763..66104051, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 9 NC_035085.1 (58133478..58156186)

Chromosome 9 - NC_048573.1Genomic Context describing neighboring genes Neighboring gene rho guanine nucleotide exchange factor 25 Neighboring gene transcription factor Sp5-like Neighboring gene glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B Neighboring gene tachykinin-3 Neighboring gene uncharacterized LOC118966097 Neighboring gene zinc finger protein 385A-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ganglioside biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4 N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048573.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    66081763..66104051 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021616787.2 → XP_021472462.2  beta-1,4 N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A8C7Q075, A0A8C7Q0V4
    Related
    ENSOMYP00000030424.2, ENSOMYT00000033166.2
    Conserved Domains (1) summary
    pfam00535
    Location:282 → 406
    Glycos_transf_2; Glycosyl transferase family 2

  2. XM_021616788.2 → XP_021472463.2  beta-1,4 N-acetylgalactosaminyltransferase 1

    UniProtKB/TrEMBL
    A0A8C7Q075, A0A8C7Q0V4
    Related
    ENSOMYP00000030448.2, ENSOMYT00000033193.2
    Conserved Domains (1) summary
    pfam00535
    Location:282 → 406
    Glycos_transf_2; Glycosyl transferase family 2
Nucleotide Protein
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