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LOC110532691 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110532691, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110532691
Gene description
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B
See related
Ensembl:ENSOMYG00000014252
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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Location:
chromosome: 9
Exon count:
7
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 9 NC_048573.1 (66110389..66129843)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 9 NC_035085.1 (58102358..58127170, complement)

Chromosome 9 - NC_048573.1Genomic Context describing neighboring genes Neighboring gene transcription factor Sp5-like Neighboring gene beta-1,4 N-acetylgalactosaminyltransferase 1 Neighboring gene tachykinin-3 Neighboring gene uncharacterized LOC118966097 Neighboring gene zinc finger protein 385A-like Neighboring gene baculoviral IAP repeat containing 5b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Salem M, et al. BMC Genomics, 2010 Oct 13. PMID 20942956, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048573.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    66110389..66129843
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036988729.1 → XP_036844624.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B isoform X2

    UniProtKB/TrEMBL
    A0A8C7Q0P5
    Conserved Domains (1) summary
    cl21608
    Location:81 → 245
    Galactosyl_T; Galactosyltransferase

  2. XM_036988728.1 → XP_036844623.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B isoform X1

    UniProtKB/TrEMBL
    A0A8C7PYU7, A0A8C7Q0P5
    Related
    ENSOMYP00000030397.1, ENSOMYT00000033138.2
    Conserved Domains (1) summary
    cl21608
    Location:112 → 276
    Galactosyl_T; Galactosyltransferase

  3. XM_021616784.2 → XP_021472459.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1-B isoform X1

    UniProtKB/TrEMBL
    A0A8C7PYU7, A0A8C7Q0P5
    Related
    ENSOMYP00000030392.2, ENSOMYT00000033133.2
    Conserved Domains (1) summary
    cl21608
    Location:112 → 276
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
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