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LOC110529611 exostosin-1 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110529611, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110529611
Gene description
exostosin-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
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Genomic context

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See LOC110529611 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
14
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 8 NC_048572.1 (22007750..22288163, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 8 NC_035084.1 (19008593..19292600, complement)

Chromosome 8 - NC_048572.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase TRIM9 Neighboring gene chromosome 8 C1orf131 homolog Neighboring gene glyceronephosphate O-acyltransferase Neighboring gene uncharacterized LOC118965501 Neighboring gene sterile alpha motif domain-containing protein 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the rainbow trout transcriptome using Sanger and 454-pyrosequencing approaches. Salem M, et al. BMC Genomics, 2010 Oct 13. PMID 20942956, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048572.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    22007750..22288163 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036985038.1 → XP_036840933.1  exostosin-1

    Conserved Domains (2) summary
    pfam03016
    Location:110 → 396
    Exostosin; Exostosin family
    pfam09258
    Location:480 → 725
    Glyco_transf_64; Glycosyl transferase family 64 domain

  2. XM_036985037.1 → XP_036840932.1  exostosin-1

    Conserved Domains (2) summary
    pfam03016
    Location:110 → 396
    Exostosin; Exostosin family
    pfam09258
    Location:480 → 725
    Glyco_transf_64; Glycosyl transferase family 64 domain

  3. XM_036985039.1 → XP_036840934.1  exostosin-1

    Conserved Domains (2) summary
    pfam03016
    Location:110 → 396
    Exostosin; Exostosin family
    pfam09258
    Location:480 → 725
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
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