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capn3b calpain 3b [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110529398, updated on 15-Mar-2024

Summary

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Gene symbol
capn3b
Gene description
calpain 3b
See related
Ensembl:ENSOMYG00000027788
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
zebrafish all
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Genomic context

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See capn3b in Genome Data Viewer
Location:
chromosome: 8
Exon count:
24
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 8 NC_048572.1 (12374861..12412260, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 8 NC_035084.1 (9517215..9559421, complement)

Chromosome 8 - NC_048572.1Genomic Context describing neighboring genes Neighboring gene churchill domain containing 1 Neighboring gene zinc finger protein 106b Neighboring gene nuclear receptor binding protein 1 Neighboring gene macoilin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048572.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    12374861..12412260 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036984789.1 → XP_036840684.1  calpain-3b isoform X2

    UniProtKB/TrEMBL
    A0A8C7S199
    Related
    ENSOMYP00000140459.1, ENSOMYT00000130437.1
    Conserved Domains (4) summary
    cd15897
    Location:572 → 599
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:572 → 739
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:70 → 366
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:387 → 526
    Calpain_III; Calpain large subunit, domain III

  2. XM_036984788.1 → XP_036840683.1  calpain-3b isoform X1

    UniProtKB/TrEMBL
    A0A8C7S199
    Conserved Domains (5) summary
    cd15897
    Location:603 → 630
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:603 → 770
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:70 → 366
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:387 → 526
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:535 → 601
    Calpain_u2; Unstructured region on Calpain-3

  3. XM_036984787.1 → XP_036840682.1  calpain-3b isoform X1

    UniProtKB/TrEMBL
    A0A8C7S199
    Related
    ENSOMYP00000060153.2, ENSOMYT00000065481.2
    Conserved Domains (5) summary
    cd15897
    Location:603 → 630
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:603 → 770
    EFh_PEF; The penta-EF hand (PEF) family
    pfam00648
    Location:70 → 366
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:387 → 526
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:535 → 601
    Calpain_u2; Unstructured region on Calpain-3

  4. XM_036984790.1 → XP_036840685.1  calpain-3b isoform X3

    Conserved Domains (2) summary
    cd15897
    Location:2 → 29
    EFh_PEF; EF-hand motif [structural motif]
    cl25352
    Location:2 → 169
    EFh_PEF; The penta-EF hand (PEF) family
Nucleotide Protein
Heading Accession and Version

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